Publications

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3d chart of the future
R. Arsenault, Plumlee, M. D., Smith, S. M., Ware, C., Brennan, R. T., and Mayer, L. A., “Fusing Information in a 3D Chart-of-the-Future Display”, U.S. Hydrographic Conference (US HYDRO). The Hydrographic Society of America, Biloxi, MS, 2003.Image icon Arsenault_2003_Vislab_Fusing_info_in_3D_Chart-of-the-future_display.jpg (874.53 KB)
Acoustic backscatter
M. A. Malik, Schimel, A. C. G., Roche, M., Masetti, G., Dolan, M., and Le Deunf, J., “A First Step Towards Consistency of Multibeam Backscatter Estimation Requesting and Comparing Intermediate Backscatter Processing Results From Backscatter Processing Software”, Shallow Survey 2018. p. St. John's, NL, Canada, 2018.PDF icon SS2018_Abstract_Malik_Mashkoor.pdf (417.53 KB)
Acoustic Bearings
D. V. Harris, Miksis-Olds, J., Thomas, L., and Vernon, J., “Fin Whale Density and Distribution Estimation Using Acoustic Bearings Derived From Sparse Arrays”, Journal of the Acoustical Society of America, vol. 143. American Institute of Physics, pp. 2980-2993, 2018.PDF icon Harris et al. 2018_JASA DE.pdf (2.51 MB)
ais
S. Pe'eri, Klemm, A., and Wigley, R., “First NOAA Chart Adequacy Workshop”, Hydro International. Hydro International, The Netherlands, p. 39, 2015.PDF icon We_Visited_You_Hydro_International_2015.pdf (35.82 KB)
annotation
A. H. Stevens and Butkiewicz, T., “Faster Multibeam Sonar Data Cleaning: Evaluation of Editing 3D Point Clouds Using Immersive VR”, IEEE Oceans. IEEE, Seattle, WA, p. 10, 2020.PDF icon OCEANS19-VRCleaner-FINAL.pdf (1.78 MB)
Arctic Ocean
K. Brumley, Miller, E. L., Konstantinou, A., Grove, M., Meisling, K. E., and Mayer, L. A., “First Bedrock Samples Dredged from Submarine Outcrops in the Chukchi Borderland, Arctic Ocean”, Geosphere, vol. 11, no. 1. The Geological Society of America, pp. 76-92, 2015.
asv
D. Manda, D'Amore, A., Thein, M. - W., and Armstrong, A. A., “A Flexible, Low-Cost MOOS-IvP Based Platform for Marine Autonomy Research”, MOOS-DAWG. MIT, 2015.PDF icon Manda_Presentation_LowCostASV.pdf (17.12 MB)
autonomous vehicle
D. Manda, D'Amore, A., Thein, M. - W., and Armstrong, A. A., “A Flexible, Low-Cost MOOS-IvP Based Platform for Marine Autonomy Research”, MOOS-DAWG. MIT, 2015.PDF icon Manda_Presentation_LowCostASV.pdf (17.12 MB)
autonomy
D. Manda, D'Amore, A., Thein, M. - W., and Armstrong, A. A., “A Flexible, Low-Cost MOOS-IvP Based Platform for Marine Autonomy Research”, MOOS-DAWG. MIT, 2015.PDF icon Manda_Presentation_LowCostASV.pdf (17.12 MB)
bathymetry
M. J. Wilson, Masetti, G., and Calder, B. R., “Finding Fliers: New Techniques and Metrics”, 2017 U.S. Hydrographic Conference. The Hydrographic Society of America, Galveston, TX, 2017.PDF icon Wilson_USHydro_2017_Finding_Fliers.pdf (1.22 MB)
bedrock
K. Brumley, Miller, E. L., Konstantinou, A., Grove, M., Meisling, K. E., and Mayer, L. A., “First Bedrock Samples Dredged from Submarine Outcrops in the Chukchi Borderland, Arctic Ocean”, Geosphere, vol. 11, no. 1. The Geological Society of America, pp. 76-92, 2015.
benthic-palagic coupling
M. Wengrove, Foster, D., Kalnejais, L., Purcuoco, V., and Lippmann, T. C., “Field and laboratory observations of bed stress and associated nutrient release in a tidal estuary”, Estuarine, Coastal, and Shelf Science, vol. 161. Elsevier, pp. 11-24, 2015.PDF icon 17_wengrove_etal_2015.pdf (2.37 MB)
Biodiversity
J. A. Dijkstra, Mello, K., Sowers, D., Malik, M. A., Watling, L., and Mayer, L. A., “Fine-scale Mapping of Deep-Sea Habitat-Forming Species Densities Reveals Taxonomic Specific Environmental Drivers”, Global Ecology and Biogeography, vol. 30. Wiley, pp. 1286-1298, 2021.
Breaking waves
S. Chopakatla, Lippmann, T. C., and Richardson, J., “Field verification of a CFD model for wave transformation and breaking in the surf zone”, Journal of Waterways Port Coastal Engineering, vol. 134 (2). ASCE, pp. 71-80, 2008.PDF icon 12_chopakatla_etal_2008.pdf (893.98 KB)
calibration
M. A. Malik, Lurton, X., and Mayer, L. A., “A Framework to Quantify Uncertainties of Seafloor Backscatter from Swath Mapping Echosounders”, Marine Geophysical Research, vol. 39(1-2). Springer, pp. 151-168, 2018.
chart adequacy
S. Pe'eri, Klemm, A., and Wigley, R., “First NOAA Chart Adequacy Workshop”, Hydro International. Hydro International, The Netherlands, p. 39, 2015.PDF icon We_Visited_You_Hydro_International_2015.pdf (35.82 KB)
chukchi
K. Brumley, Miller, E. L., Konstantinou, A., Grove, M., Meisling, K. E., and Mayer, L. A., “First Bedrock Samples Dredged from Submarine Outcrops in the Chukchi Borderland, Arctic Ocean”, Geosphere, vol. 11, no. 1. The Geological Society of America, pp. 76-92, 2015.
climate change
J. A. Dijkstra, Mello, K., Sowers, D., Malik, M. A., Watling, L., and Mayer, L. A., “Fine-scale Mapping of Deep-Sea Habitat-Forming Species Densities Reveals Taxonomic Specific Environmental Drivers”, Global Ecology and Biogeography, vol. 30. Wiley, pp. 1286-1298, 2021.
Coastal processes
S. Chopakatla, Lippmann, T. C., and Richardson, J., “Field verification of a CFD model for wave transformation and breaking in the surf zone”, Journal of Waterways Port Coastal Engineering, vol. 134 (2). ASCE, pp. 71-80, 2008.PDF icon 12_chopakatla_etal_2008.pdf (893.98 KB)
Computational fluid dynamics technique
S. Chopakatla, Lippmann, T. C., and Richardson, J., “Field verification of a CFD model for wave transformation and breaking in the surf zone”, Journal of Waterways Port Coastal Engineering, vol. 134 (2). ASCE, pp. 71-80, 2008.PDF icon 12_chopakatla_etal_2008.pdf (893.98 KB)
coral
J. A. Dijkstra, Mello, K., Sowers, D., Malik, M. A., Watling, L., and Mayer, L. A., “Fine-scale Mapping of Deep-Sea Habitat-Forming Species Densities Reveals Taxonomic Specific Environmental Drivers”, Global Ecology and Biogeography, vol. 30. Wiley, pp. 1286-1298, 2021.
Data Visualization
L. Bartram and Ware, C., “Filtering and Brushing with Motion”, ACM Transactions on Applied Perception (TAP), vol. 1. Association for Computing Machinery (ACM), New York, NY, USA, pp. 66-79, 2002.PDF icon Bartram_02_InfoVis_Filtering_Brushing_Motion.pdf (177.55 KB)
deep‐sea canyons
J. A. Dijkstra, Mello, K., Sowers, D., Malik, M. A., Watling, L., and Mayer, L. A., “Fine-scale Mapping of Deep-Sea Habitat-Forming Species Densities Reveals Taxonomic Specific Environmental Drivers”, Global Ecology and Biogeography, vol. 30. Wiley, pp. 1286-1298, 2021.
dredging
K. Brumley, Miller, E. L., Konstantinou, A., Grove, M., Meisling, K. E., and Mayer, L. A., “First Bedrock Samples Dredged from Submarine Outcrops in the Chukchi Borderland, Arctic Ocean”, Geosphere, vol. 11, no. 1. The Geological Society of America, pp. 76-92, 2015.
editing
A. H. Stevens and Butkiewicz, T., “Faster Multibeam Sonar Data Cleaning: Evaluation of Editing 3D Point Clouds Using Immersive VR”, IEEE Oceans. IEEE, Seattle, WA, p. 10, 2020.PDF icon OCEANS19-VRCleaner-FINAL.pdf (1.78 MB)
electronics
D. Manda, D'Amore, A., Thein, M. - W., and Armstrong, A. A., “A Flexible, Low-Cost MOOS-IvP Based Platform for Marine Autonomy Research”, MOOS-DAWG. MIT, 2015.PDF icon Manda_Presentation_LowCostASV.pdf (17.12 MB)
estuaries
J. A. Dijkstra, “Facilitation of native and non-native species by intermediate foundation species”, Coastal and Estuarine Research Federation. 2013.
esturarine geochemistry
M. Wengrove, Foster, D., Kalnejais, L., Purcuoco, V., and Lippmann, T. C., “Field and laboratory observations of bed stress and associated nutrient release in a tidal estuary”, Estuarine, Coastal, and Shelf Science, vol. 161. Elsevier, pp. 11-24, 2015.PDF icon 17_wengrove_etal_2015.pdf (2.37 MB)
excess shear stress
M. Wengrove, Foster, D., Kalnejais, L., Purcuoco, V., and Lippmann, T. C., “Field and laboratory observations of bed stress and associated nutrient release in a tidal estuary”, Estuarine, Coastal, and Shelf Science, vol. 161. Elsevier, pp. 11-24, 2015.PDF icon 17_wengrove_etal_2015.pdf (2.37 MB)
Fin Whale
D. V. Harris, Miksis-Olds, J., Thomas, L., and Vernon, J., “Fin Whale Density and Distribution Estimation Using Acoustic Bearings Derived From Sparse Arrays”, Journal of the Acoustical Society of America, vol. 143. American Institute of Physics, pp. 2980-2993, 2018.PDF icon Harris et al. 2018_JASA DE.pdf (2.51 MB)
Fish
B. O'Brien, Mello, K., Litterer, A., and Dijkstra, J. A., “Fish and the Decline of Kelp in the Gulf of Maine”, Benthic Ecology Meeting. p. Corpus Cristi, TX, 2018.
fliers
M. J. Wilson, Masetti, G., and Calder, B. R., “Finding Fliers: New Techniques and Metrics”, 2017 U.S. Hydrographic Conference. The Hydrographic Society of America, Galveston, TX, 2017.PDF icon Wilson_USHydro_2017_Finding_Fliers.pdf (1.22 MB)
Fluid dynamics
S. Chopakatla, Lippmann, T. C., and Richardson, J., “Field verification of a CFD model for wave transformation and breaking in the surf zone”, Journal of Waterways Port Coastal Engineering, vol. 134 (2). ASCE, pp. 71-80, 2008.PDF icon 12_chopakatla_etal_2008.pdf (893.98 KB)
Foundation species
J. A. Dijkstra, “Facilitation of native and non-native species by intermediate foundation species”, Coastal and Estuarine Research Federation. 2013.
geomorphology
J. A. Dijkstra, Mello, K., Sowers, D., Malik, M. A., Watling, L., and Mayer, L. A., “Fine-scale Mapping of Deep-Sea Habitat-Forming Species Densities Reveals Taxonomic Specific Environmental Drivers”, Global Ecology and Biogeography, vol. 30. Wiley, pp. 1286-1298, 2021.
global warming
J. A. Dijkstra, Mello, K., Sowers, D., Malik, M. A., Watling, L., and Mayer, L. A., “Fine-scale Mapping of Deep-Sea Habitat-Forming Species Densities Reveals Taxonomic Specific Environmental Drivers”, Global Ecology and Biogeography, vol. 30. Wiley, pp. 1286-1298, 2021.
habitats
B. O'Brien, Mello, K., Litterer, A., and Dijkstra, J. A., “Fish and the Decline of Kelp in the Gulf of Maine”, Benthic Ecology Meeting. p. Corpus Cristi, TX, 2018.
Incidence angle
M. A. Malik, Lurton, X., and Mayer, L. A., “A Framework to Quantify Uncertainties of Seafloor Backscatter from Swath Mapping Echosounders”, Marine Geophysical Research, vol. 39(1-2). Springer, pp. 151-168, 2018.
kelp
B. O'Brien, Mello, K., Litterer, A., and Dijkstra, J. A., “Fish and the Decline of Kelp in the Gulf of Maine”, Benthic Ecology Meeting. p. Corpus Cristi, TX, 2018.
Law of the Sea
J. V. Gardner, Mayer, L. A., and Armstrong, A. A., “From the Arctic to the Tropics: The U.S. UNCLOS Bathymetric Mapping Program”, Canadian Hydrographic Conference (CHC). Victoria, British Columbia, Canada, pp. 1-11, 2008.PDF icon Gardner_08_CHC_From_the_Arctice_to_the_Tropics.pdf (1.2 MB)
J. V. Gardner and Armstrong, A. A., “From Seafloor Mapping to Geological Processes: New Insights in Marine Geomorphic Features Using High-Resolution Acoustic Imaging Techniques”, American Geophysical Union (AGU). San Francisco, CA, USA, 2011.
J. V. Gardner, Mayer, L. A., and Armstrong, A. A., “From the Arctic to the tropics: The U.S. UNCLOS bathymetryic mapping program.”, Canadian Hydrographic Conference (CHC). 2008.
Mariana Trench
J. V. Gardner and Armstrong, A. A., “From Seafloor Mapping to Geological Processes: New Insights in Marine Geomorphic Features Using High-Resolution Acoustic Imaging Techniques”, American Geophysical Union (AGU). San Francisco, CA, USA, 2011.
metrics
M. J. Wilson, Masetti, G., and Calder, B. R., “Finding Fliers: New Techniques and Metrics”, 2017 U.S. Hydrographic Conference. The Hydrographic Society of America, Galveston, TX, 2017.PDF icon Wilson_USHydro_2017_Finding_Fliers.pdf (1.22 MB)
MOOS-IvP
D. Manda, D'Amore, A., Thein, M. - W., and Armstrong, A. A., “A Flexible, Low-Cost MOOS-IvP Based Platform for Marine Autonomy Research”, MOOS-DAWG. MIT, 2015.PDF icon Manda_Presentation_LowCostASV.pdf (17.12 MB)
multibeam echosounder
M. A. Malik, Lurton, X., and Mayer, L. A., “A Framework to Quantify Uncertainties of Seafloor Backscatter from Swath Mapping Echosounders”, Marine Geophysical Research, vol. 39(1-2). Springer, pp. 151-168, 2018.
Nearshore
S. Chopakatla, Lippmann, T. C., and Richardson, J., “Field verification of a CFD model for wave transformation and breaking in the surf zone”, Journal of Waterways Port Coastal Engineering, vol. 134 (2). ASCE, pp. 71-80, 2008.PDF icon 12_chopakatla_etal_2008.pdf (893.98 KB)
non-native seaweeds
J. A. Dijkstra, Litterer, A. S., Mello, K., Rzhanov, Y., and Johnson, P., “A Fish Eyes View of the Impact of Non-native Seaweeds on Temperate Reef Seascapes”, Benthic Ecology Meeting. Portland, ME, 2016.
non-native species
J. A. Dijkstra, “Facilitation of native and non-native species by intermediate foundation species”, Coastal and Estuarine Research Federation. 2013.
Northwestern Atlantic
J. A. Dijkstra, Mello, K., Sowers, D., Malik, M. A., Watling, L., and Mayer, L. A., “Fine-scale Mapping of Deep-Sea Habitat-Forming Species Densities Reveals Taxonomic Specific Environmental Drivers”, Global Ecology and Biogeography, vol. 30. Wiley, pp. 1286-1298, 2021.
Other
C. Ware, Arthur, K., and Booth, K. S., “Fishtank Virtual Reality”, ACM INTERCHI. Amsterdam, North Holland, The Netherlands, pp. 37-42, 1993.PDF icon Ware_1993_INTERCHI_Fish_tank_VR.pdf (750.44 KB)
R. Arsenault, Smith, S. M., Ware, C., Mayer, L. A., and Plumlee, M. D., “Fusing Information in a 3D Chart of the Future Display”, U.S. Hydrographic Conference (US HYDRO). Biloxi, MS, USA, pp. 0-7, 2003.PDF icon Arsenault_2003_Hydro_Fusing_Info_3D_Chart_of_the_Future.pdf (526.83 KB)
point clouds
A. H. Stevens and Butkiewicz, T., “Faster Multibeam Sonar Data Cleaning: Evaluation of Editing 3D Point Clouds Using Immersive VR”, IEEE Oceans. IEEE, Seattle, WA, p. 10, 2020.PDF icon OCEANS19-VRCleaner-FINAL.pdf (1.78 MB)
qc
M. J. Wilson, Masetti, G., and Calder, B. R., “Finding Fliers: New Techniques and Metrics”, 2017 U.S. Hydrographic Conference. The Hydrographic Society of America, Galveston, TX, 2017.PDF icon Wilson_USHydro_2017_Finding_Fliers.pdf (1.22 MB)
reflectivity
M. A. Malik, Schimel, A. C. G., Roche, M., Masetti, G., Dolan, M., and Le Deunf, J., “A First Step Towards Consistency of Multibeam Backscatter Estimation Requesting and Comparing Intermediate Backscatter Processing Results From Backscatter Processing Software”, Shallow Survey 2018. p. St. John's, NL, Canada, 2018.PDF icon SS2018_Abstract_Malik_Mashkoor.pdf (417.53 KB)
sdb
S. Pe'eri, Klemm, A., and Wigley, R., “First NOAA Chart Adequacy Workshop”, Hydro International. Hydro International, The Netherlands, p. 39, 2015.PDF icon We_Visited_You_Hydro_International_2015.pdf (35.82 KB)
Seafloor Characterization
S. Ackerman, Pe'eri, S., Bernhardt, W., Andrews, B., and Gardner, J. V., “Fine-scale sediment distribution at the mouth of the Merrimack River”, Coastal Geotools 2011. Myrtle Beach, SC, USA, 2011.
seamounts
J. A. Dijkstra, Mello, K., Sowers, D., Malik, M. A., Watling, L., and Mayer, L. A., “Fine-scale Mapping of Deep-Sea Habitat-Forming Species Densities Reveals Taxonomic Specific Environmental Drivers”, Global Ecology and Biogeography, vol. 30. Wiley, pp. 1286-1298, 2021.
sediment erosion
M. Wengrove, Foster, D., Kalnejais, L., Purcuoco, V., and Lippmann, T. C., “Field and laboratory observations of bed stress and associated nutrient release in a tidal estuary”, Estuarine, Coastal, and Shelf Science, vol. 161. Elsevier, pp. 11-24, 2015.PDF icon 17_wengrove_etal_2015.pdf (2.37 MB)
sediment nutrient release
M. Wengrove, Foster, D., Kalnejais, L., Purcuoco, V., and Lippmann, T. C., “Field and laboratory observations of bed stress and associated nutrient release in a tidal estuary”, Estuarine, Coastal, and Shelf Science, vol. 161. Elsevier, pp. 11-24, 2015.PDF icon 17_wengrove_etal_2015.pdf (2.37 MB)
sediment resuspension
M. Wengrove, Foster, D., Kalnejais, L., Purcuoco, V., and Lippmann, T. C., “Field and laboratory observations of bed stress and associated nutrient release in a tidal estuary”, Estuarine, Coastal, and Shelf Science, vol. 161. Elsevier, pp. 11-24, 2015.PDF icon 17_wengrove_etal_2015.pdf (2.37 MB)
software comparison
M. A. Malik, Schimel, A. C. G., Roche, M., Masetti, G., Dolan, M., and Le Deunf, J., “A First Step Towards Consistency of Multibeam Backscatter Estimation Requesting and Comparing Intermediate Backscatter Processing Results From Backscatter Processing Software”, Shallow Survey 2018. p. St. John's, NL, Canada, 2018.PDF icon SS2018_Abstract_Malik_Mashkoor.pdf (417.53 KB)
Sparse Arrays
D. V. Harris, Miksis-Olds, J., Thomas, L., and Vernon, J., “Fin Whale Density and Distribution Estimation Using Acoustic Bearings Derived From Sparse Arrays”, Journal of the Acoustical Society of America, vol. 143. American Institute of Physics, pp. 2980-2993, 2018.PDF icon Harris et al. 2018_JASA DE.pdf (2.51 MB)
sponge
J. A. Dijkstra, Mello, K., Sowers, D., Malik, M. A., Watling, L., and Mayer, L. A., “Fine-scale Mapping of Deep-Sea Habitat-Forming Species Densities Reveals Taxonomic Specific Environmental Drivers”, Global Ecology and Biogeography, vol. 30. Wiley, pp. 1286-1298, 2021.
Surf zone
S. Chopakatla, Lippmann, T. C., and Richardson, J., “Field verification of a CFD model for wave transformation and breaking in the surf zone”, Journal of Waterways Port Coastal Engineering, vol. 134 (2). ASCE, pp. 71-80, 2008.PDF icon 12_chopakatla_etal_2008.pdf (893.98 KB)
Surface waves Turbulence
S. Chopakatla, Lippmann, T. C., and Richardson, J., “Field verification of a CFD model for wave transformation and breaking in the surf zone”, Journal of Waterways Port Coastal Engineering, vol. 134 (2). ASCE, pp. 71-80, 2008.PDF icon 12_chopakatla_etal_2008.pdf (893.98 KB)
survey
M. J. Wilson, Masetti, G., and Calder, B. R., “Finding Fliers: New Techniques and Metrics”, 2017 U.S. Hydrographic Conference. The Hydrographic Society of America, Galveston, TX, 2017.PDF icon Wilson_USHydro_2017_Finding_Fliers.pdf (1.22 MB)
temperate reef seascapes
J. A. Dijkstra, Litterer, A. S., Mello, K., Rzhanov, Y., and Johnson, P., “A Fish Eyes View of the Impact of Non-native Seaweeds on Temperate Reef Seascapes”, Benthic Ecology Meeting. Portland, ME, 2016.
Thesis; Field Calibration; Multibeam echo sounder; Split beam sonar system
C. Lanzoni, “Field Calibration Methodology for a Multibeam Echo Sounder Using a Split Beam Sonar System and a Standard Target”, University of New Hampshire, Durham, NH, 2011.PDF icon lanzoni-carlo-thesis.pdf (7.32 MB)
unclos
J. V. Gardner, Mayer, L. A., and Armstrong, A. A., “From the Arctic to the tropics: The U.S. UNCLOS bathymetryic mapping program.”, Canadian Hydrographic Conference (CHC). 2008.
virtual reality
A. H. Stevens and Butkiewicz, T., “Faster Multibeam Sonar Data Cleaning: Evaluation of Editing 3D Point Clouds Using Immersive VR”, IEEE Oceans. IEEE, Seattle, WA, p. 10, 2020.PDF icon OCEANS19-VRCleaner-FINAL.pdf (1.78 MB)